Scaffold Ga0129345_1008167

Overview

Basic Information

• Taxon OID: 3300010297
• Scaffold ID: Ga0129345_1008167
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_20_0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4084
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → SAR324 cluster → SAR324 cluster bacterium JCVI-SC AAA005 (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 37.1849
  • Long. (^o): -76.1104

Associated Families

Family	Category	Number of Sequences	3D Structure?
F078323	Metagenome / Metatranscriptome	116	N
F089993	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0129345_10081673	F078323	N/A	MTKNFIFCLYVIIFSPLLVFGNNPFSTKLTTNQKKVELAEKKLDFDTAKALGNEQTTSNVAPGNLNFRLVGIVSNNGECSILIRSEDSYEWVESGNFWKDWQFDSCEESLALFSNGDQLKRLSLGQASIEVKSSKTFAK*
Ga0129345_10081674	F089993	AGG	LKFELELQMISIKQKFINFPERQLGLLFILFSLMIILMVRQFWWQSLEREIKFLEKKISSNQSELNNLPPEIFSKDLIQYETSSDSPAKSLQLLQESIKNFEIQILQQNLNSINDSKNNGGFEIILSLKATYQNLKKWLERLESQKNILHITRINVKNLDTSEVSPKIQLDLTVNGFQIPEK*