Scaffold Ga0129345_1000500

Overview

Basic Information

• Taxon OID: 3300010297
• Scaffold ID: Ga0129345_1000500
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_20_0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14273
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (16.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 37.1849
  • Long. (^o): -76.1104

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005937	Metagenome / Metatranscriptome	386	Y
F010314	Metagenome / Metatranscriptome	305	Y
F064620	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129345_100050018	F010314	N/A	MEDLKIYGFNAIALALSITEINPYLQTISLLLAIGYTAISISKKLK*
Ga0129345_100050019	F005937	N/A	MSSKIDINGDGKADFSVSPTQIISVAVMFASIIGSYYTLSAKIDANTAEVTKLKYNEKEYTWKAQRQLEAEVREITLEMRDFMKDLEYLKKK*
Ga0129345_10005005	F064620	N/A	MATTKNTSYRVHVQDTTQAEVDSVNIENGAMLRTDDALYMGHNGQNVIVYPQTGGLNLGWARYNDTFYTGLGEGDSNKLLLSDGIEVTLPNNGGTVTRSHPSIDFYDVANQKFVGLNENDVYAVTVVFKKSAANANQTHLDFKLTGADDYDRINMALGFYKGNDETQNQHIMLQYYLDANALANGLTPKVTADGGNAKIWGIIFFIQRTQNAG*