Scaffold Ga0129348_1061978

Overview

Basic Information

• Taxon OID: 3300010296
• Scaffold ID: Ga0129348_1061978
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1339
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 37.0306
  • Long. (^o): -76.0464

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004603	Metagenome	431	Y
F009521	Metagenome / Metatranscriptome	316	Y
F062678	Metagenome	130	N
F088712	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0129348_10619781	F088712	N/A	YIMQAGLVKGRNHLLKNGWEYCANSTSLTNGWNTGSYNRFLKCWTFDNNILNQRDVNHTETQSTLKGLGWIK*
Ga0129348_10619782	F009521	GGTGG	MKYQIIINNGTLKGFIAFKGSCLSTMKDKYKRLEQQGHKLKLIRGE*
Ga0129348_10619784	F062678	AGGCGG	MTQQDQNILKKLKRKYPGLPVVGSPKDWERIEKMLSKDDLKLYKLITKKGK*
Ga0129348_10619786	F004603	N/A	MIFSININGSIVDWCYNLDCREKQYHKTWIPKLRDIQILSKDLDGLTVSEVKKIILEDIQPDINMVKEHNNKLARARRMGK*