Scaffold Ga0129348_1006278

Overview

Basic Information

• Taxon OID: 3300010296
• Scaffold ID: Ga0129348_1006278
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4334
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 37.0306
  • Long. (^o): -76.0464

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033765	Metagenome	176	N
F052939	Metagenome	142	Y
F103914	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0129348_100627810	F033765	GAGG	MKSLLRTILDECEKNKLMYRANAYDLWNNGCEDMIVPWGYDFEALTETMKAFELDERLGNIQIIPESKVKTHAELIKEIRCNALKNCFSEYEEHFKKCSEDDLIQEFPDEYYSGHMWIMWTNYGGNEHLDCFTDYTTSLDKYFNVSELTNEWEDKYNEFKLGLI*
Ga0129348_10062784	F103914	N/A	MRDCIETEISSTDFTLEEYFRCSLIDRGVASTRSEMIARRMAEGNLEGLAYHVASCDPHYLRKLIQAEPRLIHMLLQNNKMSDLDVKIVEEEVLR*
Ga0129348_10062789	F052939	GGAG	MNIEQKILDQIWDALMKNGKCPDYFNFATDLRYDHSINYNPDNPTISLVVLKAGRPTTYKISINEVKR*