Scaffold Ga0129348

Basic Information
Taxon OID	3300010296 Open in IMG/M
Scaffold ID	Ga0129348_1000156 Open in IMG/M
Source Dataset Name	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.8_DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300010296 Open in IMG/M

Scaffold ID

Ga0129348_1000156 Open in IMG/M

Source Dataset Name

Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.8_DNA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	23207
Total Scaffold Genes	40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	22 (55.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

23207

Total Scaffold Genes

40 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

22 (55.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Chesapeake Bay
Coordinates	Lat. (^o)	37.0306	Long. (^o)	-76.0464	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Chesapeake Bay

Coordinates

Lat. (^o)

37.0306

Long. (^o)

-76.0464

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F003409	Metagenome / Metatranscriptome	488	Y
F063651	Metagenome	129	N
F097258	Metagenome	104	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0129348_10001561	F003409	N/A	TMDSQITYLRGQIAGIDAQLAADNGKSTILQFLGKAKALLAAREELTEPVNRANTEALVTQIAAAVAAYNAVNQITMDSVEDIMAGFDAAVAPADEPAPADEPADAPVE*
Ga0129348_100015636	F097258	GAG	MNELIKLAESIGELAKLPDTTKELIQAQHNVINTQSARIQNLENRLVGIMSKDDVKSITVSVMEQFLKDMKPQSDQDQYTLMIDHTNPDKSLEEAIRKGQELQQPFWEEGEERFQSEFGNSPSGKGWYGSTHMPVITLLFSGNEYRFHNTIRIPGRFQMKSVTRWGPAIRTLGDGDKVLKVESIFGWNPCVGHPIGIYTEPATELLSGMIVRPFEQEIRECMIVAHNNCVPVYLAQNPDRLQIINNNIQSHQGSNIGIFHGPHIDADWMPKSARSGDDVYLGDSTISHNQIEGPHRMEHNGSRKQAGIFYSGQAVQTCFNRFFGYSQCIYSHGGRSRLSMGNQAYAKPTADGRVWARPDELVGATFCIPSWNRMEEDHLSPFVGAYFGDIRADKNERVQKTAGWHKAGEAFL*
Ga0129348_10001569	F063651	GAG	MSLPRYFSNHASAFKPLGSGGTLLLVDKKTFRSGDPNNPTWEITDVWQGHPTVIVHARDNPSIYFDDASWIKDLSTKEKGPIWEAEVKYGNIELLSTWTLDSNMIEPRISTHPNAIILDSARPGWTNMIEHFVDYHRNNLNDRVFNFAQVQMIPATVIGSGDTQGSLDDMDIGAAGLIKWHKPLESGAWVYPVTGYSIDDLNLLAAKYAQAFLLGQEAYQEPQWVIRNEVTVSAAFNFSLWPKMFLNVNRMFTSQQMRFEPLLAGEVIPAGIVVPGVPYWHKQPIQKTQTTLNQFVINREWYGRYWFNEFTYSLAS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0129348_1000156

Overview

Ecosystem & Geography

Associated Families

Sequences