Scaffold Ga0126334_10317234

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0126334_10317234

Scaffold Ga0126334_10317234

Overview

Basic Information
Taxon OID	3300010295 Open in IMG/M
Scaffold ID	Ga0126334_10317234 Open in IMG/M
Source Dataset Name	Marine gutless worms symbiont microbial communities from Oahu, Hawaii - Inanidrilus sp. 2 OAHU.JWI-49 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	670
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location Name	Hawaii, USA
Coordinates	Lat. (^o)	21.4686	Long. (^o)	-157.8184	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000002	Metagenome	15118	Y
F003504	Metagenome	482	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126334_103172341	F000002	GGA	VSRYQKCKTNLDFTEARDSEWQWHQLDHMQVCTSVQTDNHASTPTLSFYRPDALPAAQPT
Ga0126334_103172342	F003504	N/A	VNAFKARLDKFWKHQSVKFDFTADLTGTGNRSQEVIK*

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