Scaffold Ga0126334_10004084

Overview

Basic Information

• Taxon OID: 3300010295
• Scaffold ID: Ga0126334_10004084
• Source Dataset Name: Marine gutless worms symbiont microbial communities from Oahu, Hawaii - Inanidrilus sp. 2 OAHU.JWI-49 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5538
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Annelida (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Hawaii, USA
• Coordinates
  • Lat. (^o): 21.4686
  • Long. (^o): -157.8184
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018871	Metagenome	232	N
F098782	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126334_100040841	F098782	N/A	TTSSSSSSSGSCVDEKHQYGYIIDKSSVNKKNVSVCHARSNGQTHVYLSTANTAQLVLTNNASDNFLLKVQGTRK*
Ga0126334_100040847	F018871	GGA	MVSVTSSPLHIAAAAAAAGVDSWSTQSNIGCGTKTQPWMLEAPAGQRINISLLDFTAAAR