Scaffold Ga0116204_1086864

Overview

Basic Information

• Taxon OID: 3300010293
• Scaffold ID: Ga0116204_1086864
• Source Dataset Name: Anoxic lake water microbial communities from Lake Kivu, Rwanda to study Microbial Dark Matter (Phase II) - Lake Kivu water 52m metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1101
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Campylobacteraceae → Campylobacter → Campylobacter coli (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Lake Water → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Rwanda: Lake Kivu
• Coordinates
  • Lat. (^o): -1.78
  • Long. (^o): 29.2
  • Depth (m): 52

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005528	Metagenome	397	Y
F006986	Metagenome	360	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116204_10868641	F005528	AGGA	MRILTAIMAMLTSLTISLGIAQAVAAPNQPKDPLIASQPLWYPPVADRVDPISPIVYRHGDVSWLPSLAKQAGWPDHTIGKLTHIVLRESGGCPGRRGGDVVDKNCVITGVSEWNHRSDTGLLQINGVNYDLSRNKWAAVCLQMNICTQEPLLDPFTNLKAGLVLWR
Ga0116204_10868642	F006986	GGA	MSVVAVTWHDAHSGTETWCAIKDLDTDPAVVETVGFLLPTTDGGKPGHLTIYQSRQDDNVDHVLHIPEPMVKQVKVLFELENKLQNREN*