Scaffold Ga0116204_1010933

Overview

Basic Information

• Taxon OID: 3300010293
• Scaffold ID: Ga0116204_1010933
• Source Dataset Name: Anoxic lake water microbial communities from Lake Kivu, Rwanda to study Microbial Dark Matter (Phase II) - Lake Kivu water 52m metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4035
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Lake Water → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Rwanda: Lake Kivu
• Coordinates
  • Lat. (^o): -1.78
  • Long. (^o): 29.2
  • Depth (m): 52

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028157	Metagenome	192	Y
F041769	Metagenome	159	Y
F051124	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116204_10109332	F041769	AGGAG	MSYDPDALRQMNEEAQLRISELSVALAHVTEQRDNLEDSLKSAIREVDAYKQHVASLTATIERLRLHIQQGIEL*
Ga0116204_10109334	F028157	AGCAG	MTADTDFLSPKFITVMGDHDGHARWVGQIDCTDVMNAYRHGGVYLLVCLDQEGNLFVGFKPGRQWEASWSPPITLERR*
Ga0116204_10109335	F051124	GAGG	MTKKTDFIESFINKVGAGWCVKYVLIAIVEDEDADQSFYVQCLQDQTAAETIGLCEAVSHIQKAKIAQAWIARENETDEE*