Scaffold Ga0126326_1052565

Overview

Basic Information

• Taxon OID: 3300010292
• Scaffold ID: Ga0126326_1052565
• Source Dataset Name: Marine gutless worms symbiont microbial communities from Oahu, Hawaii - Inanidrilus sp. 1 OAHU.JWI-67 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1984
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 1

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Hawaii, USA
• Coordinates
  • Lat. (^o): 21.2833
  • Long. (^o): -157.8469
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F063240	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126326_10525653	F063240	GGCGG	VLSWPLIEARRVLRRAGRAVDIGVELAIDRGPYSVEAGR*
Ga0126326_10525654	F063240	GGCGG	VLSWPLIEARTVLRRAGRAVDIGVELAIDRGLYSVEAGKEGGRYWC*
Ga0126326_10525656	F063240	GGCGG	VLSWPLVETHTVLRRAGRAVDIGVEVAIDRGPYSVEAGREGGGYWC*
Ga0126326_10525657	F063240	GAG	MEARTVLRRAGRAVDIAVELAIDRGLYSVEAGREGGRY