Scaffold Ga0126326_1009387

Overview

Basic Information

• Taxon OID: 3300010292
• Scaffold ID: Ga0126326_1009387
• Source Dataset Name: Marine gutless worms symbiont microbial communities from Oahu, Hawaii - Inanidrilus sp. 1 OAHU.JWI-67 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3706
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cytophagaceae → Candidatus Nephrothrix → unclassified Candidatus Nephrothrix → Candidatus Nephrothrix sp. EaCA (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Hawaii, USA
• Coordinates
  • Lat. (^o): 21.2833
  • Long. (^o): -157.8469
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025894	Metagenome	199	Y
F038501	Metagenome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126326_10093873	F025894	GAG	VREDDSNDEKSGTEVDSCVKGSRMRKAVPRPEDKILLVPLRGVLISE*
Ga0126326_10093876	F038501	GAGG	VKTEKLGGVAVGEGEYGDDVAGWLVRERRSLDILPVKKEAKLSASEVPGEVVGSGEEDLRCRSLLTVCQRRLGLSEAEDTRLG*