Scaffold Ga0129299_1017362

Overview

Basic Information

• Taxon OID: 3300010289
• Scaffold ID: Ga0129299_1017362
• Source Dataset Name: Hot spring microbial mat communities from California, USA to study Microbial Dark Matter (Phase II) - Cone Pool mat layer C metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3841
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Thermofonsia Clade 3 bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Microbial Mats → Hot Spring Microbial Mat → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.4127
  • Long. (^o): -118.504

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044342	Metagenome / Metatranscriptome	154	N
F049463	Metagenome / Metatranscriptome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0129299_10173622	F044342	N/A	MHLPKSVVERFKAKAVELIPEEKEEAPSLLLTLFINYMSSDDYWCLFIPDLSRQDYKKWQEMANQVYDALYETVKYHGAGALPGEMADFAQAVIQQRRMTPDDLIKLIIISARYNQITWTKNDTSKGFNVPSQ*
Ga0129299_10173623	F049463	GGAG	MRRTSGRESLKQSESLSQAQVRELQSVLPKVPVYILGKTPLIHDLNAFLDQFGCQTDLTLLRPVKVWANLEEDIVNEADKVIDCFVPDDLKSLIIVVILPPLVALAAALVARLKERCPTLKVLVVHYRVEHEPHFLGFELFCG*