Scaffold Ga0129299

Basic Information
Taxon OID	3300010289 Open in IMG/M
Scaffold ID	Ga0129299_1013071 Open in IMG/M
Source Dataset Name	Hot spring microbial mat communities from California, USA to study Microbial Dark Matter (Phase II) - Cone Pool mat layer C metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hot spring microbial mat communities from California, USA to study Microbial Dark Matter (Phase II) - Cone Pool mat layer C metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4652
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

4652

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Microbial Mats → Hot Spring Microbial Mat → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Microbial Mats → Hot Spring Microbial Mat → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	37.4127	Long. (^o)	-118.504	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

37.4127

Long. (^o)

-118.504

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F036721	Metagenome / Metatranscriptome	169	N
F041787	Metagenome / Metatranscriptome	159	N
F066335	Metagenome / Metatranscriptome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0129299_10130714	F036721	N/A	MSKLKASHDNLLNAIYAIDGIIVVNGVDGKAISSPDPEQPLKVKGKELAKLGLDLVLLLRSEMILPVTNQDSVDEALRYFEEQGNVENVEVGESSVDNDEGRRVTSRRRRSRRNNVNA*
Ga0129299_10130715	F066335	GGAGG	MPQVVENCVLRTSFEFIQLARELLQTTPENMLGLQIMPDDNRQHDEYILLKPRPFAGRVNWRGMNQNARPTRTPFAYEQNACIITPGYWAEFQEIDEQMIRKVAQKGTHNARFDLTEYERELMMDISMKLHQTKESQIWQALVNGYVEERNDEGIAVWSQRYKIIRARFGISACDRQNSTPLADLACIARQVVGVSGAMFDTSAKMYANSRTWECLLRNTNPLDIGRMSLSACCDAVGMARLAQFFAARNLPQPVVYDGFWLDEQKRPNFYIPTGKIIMIGRRPDNQTIGAYFQPPVLIQCGNDTTGAHGTFVVRQDNACPDSRMSWQGRRIIRWTYGLEGIPVIKYPTSIISVDTGCDQCDCGTLVEACPN*
Ga0129299_10130716	F041787	N/A	LPVAIVPNAALMQGTPLTRLPDGRYTIFDPTATPPQRFAGILSRDWQTDANGNGIFRNCYPNCNMVEVCMYINGVFRIEDMRITTDQLNAIVAQGRGVVHGDANTLKGKLQLF*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0129299_1013071

Overview

Ecosystem & Geography

Associated Families

Sequences