Scaffold Ga0134092_1000193

Overview

Basic Information

• Taxon OID: 3300010286
• Scaffold ID: Ga0134092_1000193
• Source Dataset Name: Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA - 3_6_20_6_A3 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 64755
• Total Scaffold Genes: 89
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 58 (65.17%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Associated Families: 13

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Unclassified → Unclassified → Unclassified → Switchgrass Degrading → Switchgrass Degrading Microbial Communities From High Solid Loading Bioreactors In New Hampshire, Usa

Source Dataset Sampling Location

• Location Name: USA: Dartmouth College, New Hampshire
• Coordinates
  • Lat. (^o): 43.726
  • Long. (^o): -72.1429

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031110	Metagenome / Metatranscriptome	183	Y
F064748	Metagenome / Metatranscriptome	128	Y
F074840	Metagenome / Metatranscriptome	119	N
F078879	Metagenome / Metatranscriptome	116	N
F080199	Metagenome / Metatranscriptome	115	N
F088950	Metagenome / Metatranscriptome	109	N
F090569	Metagenome / Metatranscriptome	108	Y
F090570	Metagenome / Metatranscriptome	108	N
F091649	Metagenome / Metatranscriptome	107	N
F099240	Metagenome / Metatranscriptome	103	N
F101424	Metagenome / Metatranscriptome	102	Y
F103498	Metagenome / Metatranscriptome	101	N
F105431	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0134092_100019318	F090570	AGG	MNEFGNAYIEKVWCNSVKSPRPLKVIPYKKDFKVFFSVRGTEIGRITIGIFVDDILDQMLTTNILEKNKSLAIWFWYPYKRKQIGKHVIQFKIGEATDRTADSVTWKYTSDKYIVEVK*
Ga0134092_100019321	F090569	GAG	MAVEGIYTEKEKCENVYFNLKDGKKTVALELVDEKGEPIWCGNILFIDKKTGKIITCSNINHELGFTLDSCGRVIVY*
Ga0134092_100019329	F074840	AGTAGG	MLELNKNELVQLNQFIQRHERCFDENKYELTVHLHITTTGIGFDTMAECEYCGECINLTDYGCW*
Ga0134092_100019340	F099240	AGG	MKLLFNYSDFHIFPHNVCFSTLRLLLKDNFDGVYKDTNGKLIAVFDYHETEREQRIIRSASSFLEIYGYDLKRHTEIVDSIEHLEFVTKTCGVDYD*
Ga0134092_100019342	F105431	AGG	MDNDSIIKLIEKNGMNNRGKSKLISYLKGEHITRKEAIYAYCYDCQGYCVDGKAECVQTQCPLYTYSQFNKYNINKSEKE*
Ga0134092_100019346	F101424	AGG	MNYIKGLKIIGMAAFIAVCVALLIIWYAAFCYVAYVLLGMIGITGLWQTICGIVLGLFVASLPAMFKKRN*
Ga0134092_10001935	F103498	GAGG	MGSTESCELQHCRLRTDILCEVQRREEKQDARFHALIDELRLDWKETKKEVISIKDTMIQGFIALIVAIVGVYVSYLLLNVNGFF*
Ga0134092_100019365	F031110	N/A	MEFSDLLKKLWHSSYVCALSEPKVHVFVGNTRHISVSPFFNSNCDIGFEEEKALLQGKLRKINVNLFKNFHLLCFTELETIPKFKAGKVIIINEYGDFVNEIHVRNIQKIINANPLTIFKVKTRLDVVLKGNNVRMIKK*
Ga0134092_10001937	F080199	GGAG	MKIIVQGVEETNLKLSQILAAVQENVDKTLDLFSSDMTKEIKDSAPYDTGRYMSSWFYERKESLKYAIISQNSYVPYNTYLVFGTEKFKPIANESKYKYSDPERGIIHDVRQIKFIYSIKLGQLINRMNLLNVNLSLAGL*
Ga0134092_100019372	F091649	AGAAGG	MPVYDNPDYEWKQMVKKNGICDPYEESIREFKEEFERIEKKLKQTGG*
Ga0134092_10001938	F088950	N/A	MDIDGVLKEIANFIEEKVPELDNKVTTIYPESKRFTPPTVVIDIVSGRETLIIDGSKTHELVRIAIISDKKSEINRIFKLLTDAFLNYGRELTLCTYGGVSYISPVAPAFVEKDSALKRELDIVVIEFKKRG*
Ga0134092_100019381	F064748	N/A	MEDVTPCGSMNEECIAVGCKGKVWGQCHFDPKLNLLSSGSECYEEVRDTVFRVEKDNLFSSGGLNPHFDNKGKIWMKASHLKNHFKQIIGYNHETKQSIPLYKEYPYDAEVVEYALVEVKRTPVRKFVEGGE*
Ga0134092_100019383	F078879	N/A	MTPEVSNEVKEGYDILEGIGIVERTEEGQYYPTDVGAAIIYAVLCKQMLGAGADDFRSEELQKVMMNRLEEMDLVEQVDDSFIITFEGFTTFFTNLAYDCPYREEFLDWLALATAELAEEMEKL*