Scaffold Ga0136261_1001234

Overview

Basic Information

• Taxon OID: 3300010234
• Scaffold ID: Ga0136261_1001234
• Source Dataset Name: Freshwater aquifer microbial community from Bangor, North Wales, UK, before enrichment, replicate 2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Fidelity Systems Inc
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13144
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Microbial Communities Enriched With Nitrile Substrates

Source Dataset Sampling Location

• Location Name: Bangor, North Wales, UK
• Coordinates
  • Lat. (^o): 53.23
  • Long. (^o): -4.13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002322	Metagenome / Metatranscriptome	571	Y
F002542	Metagenome / Metatranscriptome	550	Y
F079362	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136261_10012341	F002322	GAGG	MADKLPYCKHVEKHILTCIQGGVAIRQMLASMQHLTNAPKSLSTMYKTYGSFIEQERSKINGAVGKKVIDQALEGDFKSQELFLRSKGGWSPTQTNIEVEQETDPDLDESAADTLLTLLGIDNDPTPEEDNG*
Ga0136261_100123410	F002542	GGAG	MHPTYLGWQVDWPVFIKMPVSANGKNWKRGEHFNWLEQSIDQDKVAILYATGYLYHNKELEVQSKVGDRLSEFSGKQLETLVNLLNAVVKDRTSSTNEYNIKKCKKSKIDDKQRGLIRRFLNNSAWVTEDFYVIRDKILND*
Ga0136261_100123412	F079362	AGGAG	MSFRSFDLLNLVRDFGEDLTLRKVTTSGAYNPATGEIDGSGTTDYTVTGYFYNYETLNVDQIRKGTRKCVISALDGHAPDEDDQLVGNGDTVAITAVTTIFSSGSAVCYICHVEE*