Basic Information | |
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Taxon OID | 3300010233 Open in IMG/M |
Scaffold ID | Ga0136235_1004603 Open in IMG/M |
Source Dataset Name | Filterable freshwater microbial communities from Conwy River, North Wales, UK. Fraction, filtered through 0.2 um filter. After WGA. |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Fidelity Systems Inc |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4517 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Filterable Freshwater Microbial Communities From Conwy River, North Wales, Uk |
Source Dataset Sampling Location | ||||||||
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Location Name | Conwy River, Conwy, North Wales, UK | |||||||
Coordinates | Lat. (o) | 53.2 | Long. (o) | -3.82 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F005120 | Metagenome / Metatranscriptome | 411 | Y |
F085597 | Metagenome / Metatranscriptome | 111 | Y |
F101004 | Metagenome / Metatranscriptome | 102 | N |
F101005 | Metagenome / Metatranscriptome | 102 | N |
Protein ID | Family | RBS | Sequence |
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Ga0136235_10046032 | F101004 | N/A | MEDIFLKLVREDITPNSYYVLHCIKQSIIPCSYVNKELEVKRLISEGWINENLTLTDKSIIFTTEIDGFFKKSKKKTSKLLLGDNFEDNVKNYSEIFPSIKLSSGKYARSNSKNLENAFRWFFETYDYDWEIVLLAAKKYVLEYRESNYQYMRTSQYFIRKQSSDKTWDSDLADYCEMIINKPDDEIIFIKERLL* |
Ga0136235_10046034 | F101005 | N/A | MYSRKEKEKEMVEHHSGYLNKLKGNYQFTAKTAFYSKGKFGRQIQFFENELNKGSDIYVELVDIVRDGTGMETDMVPMFSERPLFKYRYNPYFKEEYEVKISTNSRGDEYSAYIIPTSELVCVNKGSKEILYNQYEKDRLEEPKTQNKLSVFPDFEEEFVPKLKNIDTESSEDVSDILLEIAKGFEKLAKKLNNK* |
Ga0136235_10046036 | F005120 | N/A | MALSTKDLGNEGGSGMAKTIAPGNQTLKINSITLENFQFIEGAKHLILNAETEPIEGFQGFMIDKDNESKGHYEGQIGRVKASQYAYADGQTKSGIKIQRDKSLMXXXXXX |
Ga0136235_10046037 | F085597 | N/A | XXXKNFSDNAPIKDIYLDFCVAGKEYENKSGYTAYDMWLPKAENNKYAYGALDSDRILKYDEAKHLKKLEIKPVDNFGDDDDFTTPGKTSSDFSLD* |
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