Scaffold Ga0136235

Basic Information
Taxon OID	3300010233 Open in IMG/M
Scaffold ID	Ga0136235_1004603 Open in IMG/M
Source Dataset Name	Filterable freshwater microbial communities from Conwy River, North Wales, UK. Fraction, filtered through 0.2 um filter. After WGA.
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Fidelity Systems Inc
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Filterable freshwater microbial communities from Conwy River, North Wales, UK. Fraction, filtered through 0.2 um filter. After WGA.

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Fidelity Systems Inc

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4517
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

4517

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Filterable Freshwater Microbial Communities From Conwy River, North Wales, Uk

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Filterable Freshwater Microbial Communities From Conwy River, North Wales, Uk

Source Dataset Sampling Location
Location Name	Conwy River, Conwy, North Wales, UK
Coordinates	Lat. (^o)	53.2	Long. (^o)	-3.82	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Conwy River, Conwy, North Wales, UK

Coordinates

Lat. (^o)

53.2

Long. (^o)

-3.82

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005120	Metagenome / Metatranscriptome	411	Y
F085597	Metagenome / Metatranscriptome	111	Y
F101004	Metagenome / Metatranscriptome	102	N
F101005	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0136235_10046032	F101004	N/A	MEDIFLKLVREDITPNSYYVLHCIKQSIIPCSYVNKELEVKRLISEGWINENLTLTDKSIIFTTEIDGFFKKSKKKTSKLLLGDNFEDNVKNYSEIFPSIKLSSGKYARSNSKNLENAFRWFFETYDYDWEIVLLAAKKYVLEYRESNYQYMRTSQYFIRKQSSDKTWDSDLADYCEMIINKPDDEIIFIKERLL*
Ga0136235_10046034	F101005	N/A	MYSRKEKEKEMVEHHSGYLNKLKGNYQFTAKTAFYSKGKFGRQIQFFENELNKGSDIYVELVDIVRDGTGMETDMVPMFSERPLFKYRYNPYFKEEYEVKISTNSRGDEYSAYIIPTSELVCVNKGSKEILYNQYEKDRLEEPKTQNKLSVFPDFEEEFVPKLKNIDTESSEDVSDILLEIAKGFEKLAKKLNNK*
Ga0136235_10046036	F005120	N/A	MALSTKDLGNEGGSGMAKTIAPGNQTLKINSITLENFQFIEGAKHLILNAETEPIEGFQGFMIDKDNESKGHYEGQIGRVKASQYAYADGQTKSGIKIQRDKSLMXXXXXX
Ga0136235_10046037	F085597	N/A	XXXKNFSDNAPIKDIYLDFCVAGKEYENKSGYTAYDMWLPKAENNKYAYGALDSDRILKYDEAKHLKKLEIKPVDNFGDDDDFTTPGKTSSDFSLD*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0136235_1004603

Overview

Ecosystem & Geography

Associated Families

Sequences