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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300010233 Open in IMG/M |
| Scaffold ID | Ga0136235_1000372 Open in IMG/M |
| Source Dataset Name | Filterable freshwater microbial communities from Conwy River, North Wales, UK. Fraction, filtered through 0.2 um filter. After WGA. |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Fidelity Systems Inc |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 24057 |
| Total Scaffold Genes | 25 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (64.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Filterable Freshwater Microbial Communities From Conwy River, North Wales, Uk |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Conwy River, Conwy, North Wales, UK | |||||||
| Coordinates | Lat. (o) | 53.2 | Long. (o) | -3.82 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F038776 | Metagenome / Metatranscriptome | 165 | Y |
| F069394 | Metagenome | 124 | Y |
| F071164 | Metagenome | 122 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0136235_100037216 | F071164 | GAGG | MRIAELLTAMATWLESPNNEALCLAEDNEDCAKVVAEACILAAALLKTAAEEVDALEAPEPSKITSESINDLANLAAAFDASGDPELKKQASVLDELLLSIAAPPNAYAERKDLQENRLVALKKKYDEPRQELHETNLIGRSEKEIEKSHMTKKLNILEAPLSTRYCPDHAGVQIARIGEHMWQCELDKKSYNFDTGFELNDGTKVPGGDVAGQTQGLNVPYHAIFDTREGRLGTNR* |
| Ga0136235_100037220 | F038776 | GGAG | MSKFSVDYSSLAGQITKKAYRLSDIKDQLESVAFDIVRFKDSDKSADLWQVQSADDGEYIVALYQPDEEEKSAALWDVSISKIGSELQVSYKGDPLVRVAAARLGVPRSEINKVPGYLPAKLAANPKLVKALLNELPESAKKEVLAKYPELV* |
| Ga0136235_10003723 | F069394 | GGTGG | MIKKAYLVQMTYDVSDAEKASAERALYFFDHALKLLQLASEHLDIMKTPFKNNPEMDPKEVMKARAAIRRFRDKSVENFNEFKKAAFQCVHEMQEFASDTQTLKLMKSFISSIDDLEVKVNNFVDLFNDLEAKDFSTQIVSDIETIQKQCDDIEEIIDERIKDHIQQNILATNWTDSVGKEMEMTIEPKTPLILDLFNKRQDQLNEEIKNRGTQGN* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |