Scaffold Ga0136236_1000129

Overview

Basic Information

• Taxon OID: 3300010230
• Scaffold ID: Ga0136236_1000129
• Source Dataset Name: Filterable freshwater microbial communities from Conwy River, North Wales, UK. Not filtered control. After WGA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Fidelity Systems Inc
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11161
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (51.72%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Filterable Freshwater Microbial Communities From Conwy River, North Wales, Uk

Source Dataset Sampling Location

• Location Name: Conwy River, Conwy, North Wales, UK
• Coordinates
  • Lat. (^o): 53.2
  • Long. (^o): -3.82

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018874	Metagenome / Metatranscriptome	232	Y
F037702	Metagenome	167	Y
F044911	Metagenome	153	Y
F047492	Metagenome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136236_100012911	F047492	AGGAG	MNFDKNIFAQGQSLFTQDEFNKALTEAKAEIMAIAIQTTKQAIFMERKACAQLLMNMAEADDEGAVCTALRNAAEEVMNRIPAQCQ*
Ga0136236_100012917	F018874	N/A	MSEYDQAMLDRMQMLEEALERAETGIATRDDWDVIRFECGIPRRYKTTLETVSIRSEQWL
Ga0136236_100012925	F037702	GGA	MLSEETVKQIFFYCDVYGPDALIADEVDICQFADKIIQYVTPLITQKEHQRCVAIVDDMNKEVGRALLNQRP*
Ga0136236_10001295	F044911	AGAAGG	MTPAELLHKDAARYATNRKIAYIEAFHKGEAEHMSEEALNGRWLAHYEGYREGYWVATGDTKFSTDPIKFNAEGKATL*