Scaffold Ga0136236_1000016

Overview

Basic Information

• Taxon OID: 3300010230
• Scaffold ID: Ga0136236_1000016
• Source Dataset Name: Filterable freshwater microbial communities from Conwy River, North Wales, UK. Not filtered control. After WGA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Fidelity Systems Inc
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31991
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 47 (85.45%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Filterable Freshwater Microbial Communities From Conwy River, North Wales, Uk

Source Dataset Sampling Location

• Location Name: Conwy River, Conwy, North Wales, UK
• Coordinates
  • Lat. (^o): 53.2
  • Long. (^o): -3.82

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022833	Metagenome	212	Y
F037627	Metagenome	167	N
F048157	Metagenome	148	N
F049485	Metagenome	146	N
F061649	Metagenome	131	Y
F102396	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136236_100001621	F048157	AGGA	MATTAEVGTPLKPKEAQPDIGVLDAIKKTRGEDEGKSMNALQVVQASMANQLPPGVTMDTLLRKLASALQDPNNKLVQIGNSAFLVTLVGDGVVEFHTFSAEQPQKLLKNYIGLANTLKKQGIKKATTYSDRPEFVDLAKKSGLPVKVGQSQKMMGNEMKPVYTFELDL*
Ga0136236_100001639	F049485	GGA	MAHSGLQPISNILGSKDIQSLQLWLKRVGASMPDISTVERKIMENQKKPPFVPQEMKGRMTKNTYKKQGSSEPDWKGTFMYQGQVITFGAWENDAGFGPYYNIKLNDPNWNKQQQQYPKEVTDKPARSYPKDSEIPF*
Ga0136236_100001642	F102396	AGG	MLLFKTKRLERLEQEVVMLEDLFAQALQRIDKLEEARWGLKVDGTPKAKPGRKVKDERIS
Ga0136236_100001644	F022833	AGGAG	MATKLQDSLVRKIQENRELKDTIKDLHTQAEKDKEFLREVQDESNNLELALKKCIHSKAELNDKIEQLTDDLEKYTELYARATLVVTALGEAVFFLTKESNHGK*
Ga0136236_100001645	F037627	AGG	MKPLICVDCKWHLASKSSSLIANYDRCKASENINLVTGESTYKYCESMRLADGECGMDAKLFELNQAEETPNGN*
Ga0136236_100001646	F061649	GGAG	MRDQTDCHYPHTRLCLQDCEDGCRARKSVWRKRTIRELEDQELEDEAFARIPQHPYECKHLGICNDRPTHCLDCPSNNA*