Scaffold Ga0136218_1006017

Overview

Basic Information

• Taxon OID: 3300010229
• Scaffold ID: Ga0136218_1006017
• Source Dataset Name: Soil microbial communities from Bangor area, North Wales, UK, treated with sorgoleone, replicate 1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Fidelity Systems Inc
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1302
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Lab Enrichment → Unclassified → Unclassified → Unclassified → Soil → Soil Microbial Communities From Bangor Area, North Wales, Uk Enriched With Cashew Seed Oil

Source Dataset Sampling Location

• Location Name: Bangor area, North Wales, UK
• Coordinates
  • Lat. (^o): 53.24
  • Long. (^o): -4.01

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002821	Metagenome / Metatranscriptome	528	Y
F064003	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136218_10060171	F002821	GGAG	MKRVARRRAYRLIGLISLVGPVMSSACLKSTEPQPSTLQLNGTWNYSGVQTSPVRETLTGTLEISRESGTSFQGRLDLVGLNSQTGQTRVLGGLVSGSESVTDVIDFDANLLEAAPRRHVGQIVADTITGTWIGEGSNGSMASGTFRVERETR*
Ga0136218_10060172	F064003	GGA	LAGTRVSRSVSEIELVVAPRSGISSVQIDLSKAHVIARDGGGREWAALMTGPTTATFQALPVGTYMLDFDLSELSEPLVPRGPVPALVVTGKESKSIIITLDPRPIRMWTPPSNKSGAPNSPPSSGASPATTGASGS*