NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136218_1000660

Scaffold Ga0136218_1000660


Overview

Basic Information
Taxon OID3300010229 Open in IMG/M
Scaffold IDGa0136218_1000660 Open in IMG/M
Source Dataset NameSoil microbial communities from Bangor area, North Wales, UK, treated with sorgoleone, replicate 1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterFidelity Systems Inc
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6248
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Lab Enrichment → Unclassified → Unclassified → Unclassified → Soil → Soil Microbial Communities From Bangor Area, North Wales, Uk Enriched With Cashew Seed Oil

Source Dataset Sampling Location
Location NameBangor area, North Wales, UK
CoordinatesLat. (o)53.24Long. (o)-4.01Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003843Metagenome / Metatranscriptome466Y
F091497Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0136218_10006604F091497N/AVKDSSREPVSLLHDFVAQQHANVFMRAFSFETSLLPAGADSNAELADRVMIMDGIGFIFQLCEREPKVTSKAGDLEKWVQNQVARKGAKHIQNTRELLSGYMGLSIVNHFGHRVTVTPHDPDSFVSLIVYRVPPKSRQFRAPRFKRSRNGGFVHILHDVEYFEICEHFATPAELMDYFEFRRDLLLDWDPASAAVSESALIGQYLMEDFSSAPSPRFESAAQAHVGARACEFSFVLDSLAAKIAHQEGEWADGEYYEILSELAWLGRHDLRALKFQVRCALEAVRSNRFDLPYRIASTRTGCGFIIVPVTREFQDRALDALRSLTEASKHELDLERQVGIAMWQDSEFVDIDWVFIEGENAPDPALDERLARSYPFRTSSEQRLAPVFT*
Ga0136218_10006606F003843N/AMKLSALLALALVSAPIQAQDSTGMHVSVHVPDSVAHIVDRESASHSRFTIVSRDGQAQLLLMDTTIVAQLTDRGLARMDSREATDSIKGTANRIFARMAIGALIPLFDHGIAYHLRDLADARYADGRLQLLRANGDEVFRDVEIGKGPLMESFSPADAMAFARRAREARARLR*

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