Scaffold Ga0136218_1000660

Overview

Basic Information

• Taxon OID: 3300010229
• Scaffold ID: Ga0136218_1000660
• Source Dataset Name: Soil microbial communities from Bangor area, North Wales, UK, treated with sorgoleone, replicate 1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Fidelity Systems Inc
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6248
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Lab Enrichment → Unclassified → Unclassified → Unclassified → Soil → Soil Microbial Communities From Bangor Area, North Wales, Uk Enriched With Cashew Seed Oil

Source Dataset Sampling Location

• Location Name: Bangor area, North Wales, UK
• Coordinates
  • Lat. (^o): 53.24
  • Long. (^o): -4.01

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003843	Metagenome / Metatranscriptome	466	Y
F091497	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136218_10006604	F091497	N/A	VKDSSREPVSLLHDFVAQQHANVFMRAFSFETSLLPAGADSNAELADRVMIMDGIGFIFQLCEREPKVTSKAGDLEKWVQNQVARKGAKHIQNTRELLSGYMGLSIVNHFGHRVTVTPHDPDSFVSLIVYRVPPKSRQFRAPRFKRSRNGGFVHILHDVEYFEICEHFATPAELMDYFEFRRDLLLDWDPASAAVSESALIGQYLMEDFSSAPSPRFESAAQAHVGARACEFSFVLDSLAAKIAHQEGEWADGEYYEILSELAWLGRHDLRALKFQVRCALEAVRSNRFDLPYRIASTRTGCGFIIVPVTREFQDRALDALRSLTEASKHELDLERQVGIAMWQDSEFVDIDWVFIEGENAPDPALDERLARSYPFRTSSEQRLAPVFT*
Ga0136218_10006606	F003843	N/A	MKLSALLALALVSAPIQAQDSTGMHVSVHVPDSVAHIVDRESASHSRFTIVSRDGQAQLLLMDTTIVAQLTDRGLARMDSREATDSIKGTANRIFARMAIGALIPLFDHGIAYHLRDLADARYADGRLQLLRANGDEVFRDVEIGKGPLMESFSPADAMAFARRAREARARLR*