NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0127508_1012913

Scaffold Ga0127508_1012913


Overview

Basic Information
Taxon OID3300010199 Open in IMG/M
Scaffold IDGa0127508_1012913 Open in IMG/M
Source Dataset NamePeat moss associated microbial communities from Sphagnum species from Minnesota, USA - S1T2_Fd - Sphagnum fallax MT (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1294
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Communities From Peat Moss Sphagnum Species From Minnesota, Usa

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F093037Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0127508_10129131F093037N/AMADQVNDVADRMKHPLAQLKRALHPDPYDRNPEEAGAAVKRALEGLRKALDNGDPEQIRKALNNLRDALGKYNDATGDAAKHHPDPRKRNLLDKDADKLGDLEEDLKRLSPADTHAIKNVMDEIPDRIDNWLDNFRGDTRDDTIKAAAKANNLMASLGSIGDEDMDLGDLLSAAGELSDLMRGLIGNTADTARKLGTTEANLKPAAQAAMNLDRLLRQIEGGDTDASFDLPDTQTISLPPPSWAPSAEHHFEDIKLANARTFDEVAAAIARQIHEQSKLLSKEGDNLALELSNLARAARSGDRQALLLAAKAASAHILAFCKQINEIAQKMPCKTQHDRVEQDQLMKCSQALRNYGTQLKILASVKAASIEESRDTDESLSTLTRNLGEAVQVALKGMLAVKVVAHAH*

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