NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0124922_1106051

Scaffold Ga0124922_1106051


Overview

Basic Information
Taxon OID3300010197 Open in IMG/M
Scaffold IDGa0124922_1106051 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1000_T MetaT (Metagenome Metatranscriptome) (version 2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1945
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameUSA: Wyoming: Yellowstone National Park
CoordinatesLat. (o)44.539Long. (o)-110.798Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002982Metagenome / Metatranscriptome515Y
F007976Metagenome / Metatranscriptome341Y
F031016Metagenome / Metatranscriptome183Y
F043176Metagenome / Metatranscriptome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0124922_11060511F043176N/AMQTYKIWEGERTFLPGDDASKYKVFEITGEELGWFEDVIDGKTYYVYQTIEGEVVINIVEQNYGIGEPSRAVIYRFRSLEEAAQSEQRYALEELRLI*
Ga0124922_11060512F007976AGGAMPSNELAHFLNVALDVQAEPYPGVHVDDGVILATDGVMLVAKKFDVVFMRGEGAISPKAAKVLEALAEATWIGSVAVVGNRVTATAQTTRYDEQLGAEVAGGYREIELEFYCPRAPVARMLAVLTDESRGWQQIVENPRIKNVKEWSVKEFVALMNNPREGHELFRLKDTDDTHWYSVAQLRKGLRLFGKNSRLSVRRNAKGWLAFGDQWGYTFAVTPFVKHN*
Ga0124922_11060513F002982N/AVGVKIQFERHPHSICAVLTEPGECDRIINVARASDAFDVFALDINAAAFTPLDTLFALPRVVCVEIERREGGWRVEVAYWNGALGTLAQYETDAATLSEALARCVWALAG*
Ga0124922_11060514F031016N/AMTTITIWKGSRRVVLGDDIEFVEHETFIGEELGAVWEEENSRGTQTVFYRTEGGKIVVHQVLWSRWEGEATHAYIHVFPSLEGVNGAAAMFWRELAQAGIIPPRTVGLDE*
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