NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0124923_1017096

Scaffold Ga0124923_1017096


Overview

Basic Information
Taxon OID3300010196 Open in IMG/M
Scaffold IDGa0124923_1017096 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1200_T MetaT (Metagenome Metatranscriptome) (version 2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)968
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameUSA: Wyoming: Yellowstone National Park
CoordinatesLat. (o)44.539Long. (o)-110.798Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007404Metagenome / Metatranscriptome351Y
F014738Metagenome / Metatranscriptome260Y

Sequences

Protein IDFamilyRBSSequence
Ga0124923_10170961F007404N/ASFGVGRERSNEMDIIEIFQLLAAGHAGLTAADYLWNAVFGAIGAATAYLADTNGEVFLPRYDREQHSVELGALGRVLVGAGAGTLVGYSGYIPFIAGVVAPTLLPLLIDKITAFVERRRK
Ga0124923_10170962F014738GGAGGMKLEVLMLVSAFALAFVHPNAAQVAATAMLVLLVTRIERERKNKKRAQQIAEARGRRGN*

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