Scaffold Ga0123353_11124672

Overview

Basic Information

• Taxon OID: 3300010167
• Scaffold ID: Ga0123353_11124672
• Source Dataset Name: Labiotermes labralis P3 segment gut microbial communities from Petit-Saut dam, French Guiana - Lab288 P3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1040
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Mollusca → Gastropoda → Heterobranchia → Euthyneura → Panpulmonata → Eupulmonata → Stylommatophora → Helicina → Arionoidea → Arionidae → Arion → Arion vulgaris (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: Petit - Saut dam, French Guiana
• Coordinates
  • Lat. (^o): 5.0626
  • Long. (^o): -53.0462

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004149	Metagenome	450	Y
F007535	Metagenome	349	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0123353_111246721	F004149	N/A	PTALYSQERPGTHFTGGWVGPRAGLDGQKISSPPGFDPGPSSP*
Ga0123353_111246722	F007535	AGG	MEERYHATTQNRFYPDMSNENKNITVEAKLISPTT*