NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0123353_10527927

Scaffold Ga0123353_10527927


Overview

Basic Information
Taxon OID3300010167 Open in IMG/M
Scaffold IDGa0123353_10527927 Open in IMG/M
Source Dataset NameLabiotermes labralis P3 segment gut microbial communities from Petit-Saut dam, French Guiana - Lab288 P3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1710
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location NamePetit - Saut dam, French Guiana
CoordinatesLat. (o)5.0626Long. (o)-53.0462Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000003Metagenome14941Y
F095681Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0123353_105279271F000003N/AIKTSQLMLYREIIAVCSQIHTKHINTLCGQNVELLIVKLAVHIMTTVRYI*
Ga0123353_105279273F095681N/AMLYREIIAVCSEIHTKHINTLCGQNVELLNVTPGGTYSDHCAVHIVTTVRYIW*

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