Scaffold Ga0123353_10331385

Overview

Basic Information

• Taxon OID: 3300010167
• Scaffold ID: Ga0123353_10331385
• Source Dataset Name: Labiotermes labralis P3 segment gut microbial communities from Petit-Saut dam, French Guiana - Lab288 P3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2304
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: Petit - Saut dam, French Guiana
• Coordinates
  • Lat. (^o): 5.0626
  • Long. (^o): -53.0462

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005225	Metagenome	407	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0123353_1033138510	F005225	GAG	MVSVYVMYVLVMECTVQYREMCYGISICNACNGDGI*
Ga0123353_1033138511	F005225	N/A	SVYVMCVRVVECTVQYRDMCYYIRICNMCNGDGVYGTV*
Ga0123353_103313852	F005225	GAG	MVSVYVMCVMVMQCTVQYREKCYAISICKVFNGYVEYCTVERNVLLYQYV*
Ga0123353_103313853	F005225	GAG	MVSVYVMCVTVMQCTVQYREMCYGISICNVCNGDAMYGTV*
Ga0123353_103313854	F005225	GAG	MLSVYVMCVTVMESKVQYREMCYGINICNVCNGDGVYGTV*
Ga0123353_103313855	F005225	GAG	MVYVMCVTVMECTVEYREMCYVISICNVCNGDGE*
Ga0123353_103313856	F005225	GAG	MCVVVMECSVEYREICYCISICNVCNGDGVYSTV*
Ga0123353_103313857	F005225	GAG	MVSLYEMCAMVMQCTVQYREMCYGMSIYNVCGGDGVFGRV*
Ga0123353_103313858	F005225	GAG	MLSVYVMCVMVLECTVQNREMFYYIITCNVCNGDGVYSTV*