Scaffold Ga0131853_10157037

Overview

Basic Information

• Taxon OID: 3300010162
• Scaffold ID: Ga0131853_10157037
• Source Dataset Name: Labiotermes labralis P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Lab288 P1 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2974
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: Petit - Saut dam, French Guiana
• Coordinates
  • Lat. (^o): 5.0626
  • Long. (^o): -53.0462

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005225	Metagenome	407	Y
F042405	Metagenome	158	Y
F062354	Metagenome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0131853_101570371	F062354	N/A	ISELGAAVITRDTTLKFPGKCEIFRKPGSATSHSVNMAA*
Ga0131853_101570373	F042405	N/A	MILTVILEGISKATTVLSVLVKVCTIPFHDSGHINVVLILQSCSDSLHKLPSSSSETNATSGGVCNFSNTDVEEDVDVIEEIFVSINEEVDRVIKQEEIPGDKTFPDIQSEPDGVSYICMSGIGHIFRCPGIFFYL*
Ga0131853_101570374	F005225	AGG	VVSVYVMCLMVMECMVQYREMCYGISICNVCNGDAVYSTL*
Ga0131853_101570375	F005225	GAG	MVSVYVMCVMVMQCTVHYREMCYGISICNVCNGDGVYGTL*
Ga0131853_101570376	F005225	GAG	MVSVYVMCVMVMECTVHYREMYYGISICNVCNGDGVYSTL*