Scaffold Ga0131853_10134836

Overview

Basic Information

• Taxon OID: 3300010162
• Scaffold ID: Ga0131853_10134836
• Source Dataset Name: Labiotermes labralis P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Lab288 P1 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3381
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (88.89%)
• Novel Protein Genes: 15
• Novel Protein Genes with Ribosome Binding Sites (RBS): 14 (93.33%)
• Associated Families: 1

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: Petit - Saut dam, French Guiana
• Coordinates
  • Lat. (^o): 5.0626
  • Long. (^o): -53.0462

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005225	Metagenome	407	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0131853_1013483610	F005225	GAG	MVSVYVMCVMVVEFTVQYREMCYGISIRNVCNGDGVYGRV*
Ga0131853_1013483611	F005225	GAG	MVSVYVMCVMVMECTVHYREMGYGISICNVCNGGGVYSTV*
Ga0131853_1013483612	F005225	GAG	MVSVYVMCVMVIECKVHYREMGYGISICNVCNGDGVYGTL*
Ga0131853_1013483613	F005225	GAG	MVLVYVMCVMVMECTVHYREMGYGISICNVCNGDRV*
Ga0131853_1013483614	F005225	GAG	MVSVYVMCVMVMECTVHYREMGYGTSICNVCNGDGVYGTL*
Ga0131853_1013483615	F005225	GAG	MVSVYVMCVMVTECMVHYREMGYGISICNVCNGDGVYGTL*
Ga0131853_1013483616	F005225	GAG	MVSVYVMCVMVMECTVRYREMCYGISICNVCNGDGVYGTL*
Ga0131853_1013483617	F005225	GAG	MVPVYVMCVMVMECTIHYREMGYGISICNVCNGDGVYGKV*
Ga0131853_1013483618	F005225	N/A	KCVMVSVYVMCVMVMECMVQYREMCYGISICNVCNGDGVYDTVLRNVLWYQYM*
Ga0131853_101348364	F005225	GAG	MISVYVMCVMVIDCTVLYGEICYGISVCRVFNVDGVYGRIQRNVLWYQYI*
Ga0131853_101348365	F005225	GAG	MVSVYVMCVTVMECTVQYREICYCINIFNVCNGDGVYGTV*
Ga0131853_101348366	F005225	GAG	MVSVYIMCAMVMHCTVEYREMCYGISICKVCNGDEIYGTVLRNVLWYQYM*
Ga0131853_101348367	F005225	GAG	MVSVYVMCVILMECKLQYREMCYGISICNVCNGDGVYSRVERNVLWYQYI*
Ga0131853_101348368	F005225	GAG	MVSVYVMCVMVMECTVYYREMGYGISICNVCNIDGV*
Ga0131853_101348369	F005225	GAG	MVSVYVMCVMVMECTVEYREMCFGISICNVCNGDGVYSTV*