Basic Information | |
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Taxon OID | 3300010162 Open in IMG/M |
Scaffold ID | Ga0131853_10121499 Open in IMG/M |
Source Dataset Name | Labiotermes labralis P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Lab288 P1 (version 2) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3682 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (63.64%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Polyneoptera → Dictyoptera → Blattodea → Blattoidea → Termitoidae → Rhinotermitidae → Coptotermitinae → Coptotermes → Coptotermes formosanus | (Source: UniRef50) |
Source Dataset Ecosystem |
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Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany |
Source Dataset Sampling Location | ||||||||
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Location Name | Petit - Saut dam, French Guiana | |||||||
Coordinates | Lat. (o) | 5.0626 | Long. (o) | -53.0462 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F037271 | Metagenome | 168 | Y |
F042405 | Metagenome | 158 | Y |
F046452 | Metagenome | 151 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0131853_1012149911 | F042405 | AGAAG | MLFPCNILEGISKAATLLAVLMKVCTIPHHDRRYFYVVLVLQTCTDSLHILPSSSSLTNATSGAVCNFSNTEVEEDVDVIEEMFVSVNEKLDRGIKQEENPRDITFPDIKSEQGKVSYICMSGIGHILPVSSNLIFL* |
Ga0131853_101214992 | F037271 | N/A | VVLYLLKCAFFNAFFVYRTINTNKKVKYKNFLHEVGRLWISEIQNRSEPSSDELQLPERQTAPRGPEQDLPGRLTGDFRIHKLEKIVGGGEGKRMYPARQCKVCAAH* |
Ga0131853_101214993 | F046452 | AGG | VFFIPKMVDSPVFYVAILTLWLVALPGFLNISRVPGNVNVMSLIITAAPSLLILCSVEAILIVQ* |
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