Scaffold Ga0131853_10099441

Overview

Basic Information

• Taxon OID: 3300010162
• Scaffold ID: Ga0131853_10099441
• Source Dataset Name: Labiotermes labralis P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Lab288 P1 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4321
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: Petit - Saut dam, French Guiana
• Coordinates
  • Lat. (^o): 5.0626
  • Long. (^o): -53.0462

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005225	Metagenome	407	Y
F042405	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0131853_1009944110	F005225	GAG	MVSVYVMCVTVMECTVQYREMCYGISICNVCNGDGVYGTV*
Ga0131853_1009944111	F005225	GAG	MVSVYVMCVTVMECMVQYREMCYGIRICKVCNGDRVYGTV*
Ga0131853_100994413	F042405	N/A	MILTVILEGISKATTVLSVLVKMCTIPCHDSGHINVVLVSQSCSDPLHILPSSSSQTNATSGGVCNFSNVEVEEDVDVIEELFTSINEEVDRGIKQEEIPGDITFPNIKSEPDGVSYICMSAIGHIV*
Ga0131853_100994414	F005225	AGG	VVSEYVMCVMVMECMVQYREMCYGISICNVCNGDGVYGTV*
Ga0131853_100994416	F005225	GAG	MVSVYVMCVMVMEYMVQHREMCYGISICNVCKGDGVYGTV*
Ga0131853_100994417	F005225	GAG	MVSVYVMCVKVMECMVQYREMCYGISICNVCKGDGVYGTV*
Ga0131853_100994418	F005225	GAG	MVSVYVMCVKVMECTVQYREMCYGISICNVCNGDGVYGTE*
Ga0131853_100994419	F005225	GAG	MVLVYVMFVMVMECTVQNREMCYGIGICNVCNGDGVYGTV*