Scaffold Ga0131853_10069202

Overview

Basic Information

• Taxon OID: 3300010162
• Scaffold ID: Ga0131853_10069202
• Source Dataset Name: Labiotermes labralis P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Lab288 P1 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5660
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 1

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: Petit - Saut dam, French Guiana
• Coordinates
  • Lat. (^o): 5.0626
  • Long. (^o): -53.0462

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005225	Metagenome	407	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0131853_100692022	F005225	GGA	LYSIEKCVMVSVYIMCVMVLGCMVQYREMCYGISICNVCNGVGVHGTV*
Ga0131853_100692023	F005225	GAG	MVSVYVMCVMVLGCMVQYREMCYGIRICNVCNGDGVYGTVQRNVLSIHM*
Ga0131853_100692024	F005225	N/A	MCVMVMECMVQYTDMCYGISICNVCNGDGVYGTV*
Ga0131853_100692025	F005225	GAG	MVSECVMCVMVMECTVKYTDMSYGISICNVCNGVGVLGTVKRNMLWYNYM*
Ga0131853_100692026	F005225	N/A	MVSVYVMCVMVMKFTVQYREMCYGISICNVCNGDGVCGTV*
Ga0131853_100692027	F005225	GAG	MVLAYVMFVMVMECAVQYRKMCHGISICNVCNGDGVYGTV*