Scaffold Ga0131853_10048646

Overview

Basic Information

• Taxon OID: 3300010162
• Scaffold ID: Ga0131853_10048646
• Source Dataset Name: Labiotermes labralis P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Lab288 P1 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7201
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: Petit - Saut dam, French Guiana
• Coordinates
  • Lat. (^o): 5.0626
  • Long. (^o): -53.0462

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012685	Metagenome	278	Y
F013655	Metagenome	269	Y
F014030	Metagenome	266	Y
F030477	Metagenome	185	Y
F081498	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0131853_100486464	F013655	N/A	VQNTLEEKIGAIGCDRGNVKVQWNNMKECVLGTVSDLVGKVKKKARKPWITQETISKMDERRK*
Ga0131853_100486465	F030477	GAG	VLKIWENYTAELYDRPNRPETLEVEPEEEVDTDEKGPYILQSEVEKP*
Ga0131853_100486466	F012685	GGA	MRNKQATGDDNVPGDVLKLLGEGGLKIMMKLINTIYETGE*
Ga0131853_100486468	F014030	GGA	MLRIISERTLEIDEELRVWFLDWQKAFHRVNWTKLMQILEGSGIDWHERRLISNLYMARSVKVQLN*
Ga0131853_100486469	F081498	AGGA	LSPILFNLYSECLTNEVLEGFGDFKIGRQIIHTVKYANDLVLLAMEEKVLHDMID*