Scaffold Ga0131853_10019561

Overview

Basic Information

• Taxon OID: 3300010162
• Scaffold ID: Ga0131853_10019561
• Source Dataset Name: Labiotermes labralis P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Lab288 P1 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12321
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: Petit - Saut dam, French Guiana
• Coordinates
  • Lat. (^o): 5.0626
  • Long. (^o): -53.0462

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000062	Metagenome	2853	Y
F003012	Metagenome	513	Y
F006224	Metagenome	378	Y
F049725	Metagenome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0131853_100195612	F006224	AGG	MQLEAVYAVEITKLVEYVDRKEDLLIQVVRTNQHNTDSAVLQTARCLRTEVQKDTKKMQDNIAEKTKEG*
Ga0131853_100195613	F003012	N/A	MPKPVYEEGDVTVLWNQAVHTDRKVTANRPDIIIKNKKKRKRAQ*
Ga0131853_100195614	F049725	GAG	MIDVVLPADKNVVQKEAEKKLKYKSLCIDIQRMCNLKCTIIPVIIGATGIVTRSLRKNLEAVKLYQQNIR*
Ga0131853_100195615	F000062	N/A	MWNVKTKVIPVIIGVTATNSKSFKKYVNNIPGKHEVKELQKSAILGTAHILRKVLI*