Scaffold Ga0131853_10011389

Overview

Basic Information

• Taxon OID: 3300010162
• Scaffold ID: Ga0131853_10011389
• Source Dataset Name: Labiotermes labralis P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Lab288 P1 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16279
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (26.32%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: Petit - Saut dam, French Guiana
• Coordinates
  • Lat. (^o): 5.0626
  • Long. (^o): -53.0462

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011495	Metagenome	290	Y
F032502	Metagenome	179	Y
F092283	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0131853_1001138917	F032502	N/A	MDKDNTRVNQKVKAIFKLRGNWDREELAHCALLTMPVEKFSHVQYSALPSVEWQQRGRKLGPSFAILHHRRTTWCSAVSLGRKSETCGNSPSYVDSLQTEHHESMKGL*
Ga0131853_1001138919	F092283	N/A	MEVICYIRKHHQFVDLHSNIHAHNTRRKMDIHVQSYNTDLYKRSIINMGTKLYKKLPVYIKEIDSYKTFKKELKSLLLLHSLYSVEEFVAL*
Ga0131853_100113898	F011495	N/A	LKIKEILKGRHFDDIVDIRSNTTAALKAIPQNQLQNCFEGWTRCWHRCIASQREKFEGDNGGIQQ*