Scaffold Ga0131853_10011289

Overview

Basic Information

• Taxon OID: 3300010162
• Scaffold ID: Ga0131853_10011289
• Source Dataset Name: Labiotermes labralis P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Lab288 P1 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16346
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (41.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: Petit - Saut dam, French Guiana
• Coordinates
  • Lat. (^o): 5.0626
  • Long. (^o): -53.0462

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000227	Metagenome	1519	Y
F075028	Metagenome	119	Y
F081493	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0131853_1001128910	F075028	GGA	MGLEIQETTIYSMLFADDQLLIAQDYEDLEYMTRKLINEYELCGLKLNVKKN*
Ga0131853_100112897	F000227	GGA	MEEGRLPKEVMKWRSPGRRKRSTPKLTWAEGIRGLMGEKGLMEEDWNDRSNWRKKII*
Ga0131853_100112898	F081493	GGA	VTPKTKTHIYHAVVKSTITYAAETWCLKTKTVAKLNSTEMGFWRRSARISRKDKIRNTIIKQKMNVVRSLLDDIKTKQLQ*