Scaffold Ga0131853_10009391

Overview

Basic Information

• Taxon OID: 3300010162
• Scaffold ID: Ga0131853_10009391
• Source Dataset Name: Labiotermes labralis P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Lab288 P1 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17891
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: Petit - Saut dam, French Guiana
• Coordinates
  • Lat. (^o): 5.0626
  • Long. (^o): -53.0462

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000050	Metagenome	3273	Y
F000558	Metagenome	1026	Y
F037465	Metagenome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0131853_100093911	F000558	GGA	LKKSITQLVIYFVEEGPGSGSEDIKKECDVNCFNFFFSVFLMGVMGGKITINLKELH*
Ga0131853_1000939110	F037465	GGAGG	MRSMYWQLGILGTVSAFAYRQRETKKNLCGGGRSQDLPNTDF*
Ga0131853_100093914	F000050	N/A	MKYTVKVAVCSEIRTKHSMQSEHRVEFFNVKPGGT*