Scaffold Ga0114967_10145888

Overview

Basic Information

• Taxon OID: 3300010160
• Scaffold ID: Ga0114967_10145888
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1319
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015570	Metagenome	253	Y
F029673	Metagenome	187	N
F032957	Metagenome	178	Y
F079815	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114967_101458881	F079815	N/A	MRIEQSVKTLDKKCLNSKYDGFIQDISAIQNDLVMLSHWIGEQQVKQSQY
Ga0114967_101458882	F032957	AGGAG	MDEFNPTTRMFPRSLREAYPKDYVNENLIEGPFYSAPNIHDIPVLFGLITVLGMIAVAIWRYF*
Ga0114967_101458885	F015570	GAGG	MNDKLDEAFDLLEFDVTDHIRNSVYLAEQRKISTGVTDGSIQRALVRDLTENLRSLPVSNDPLLIRNDVLEEVAVELARLPFGDTAASYAAFVRAMKS*
Ga0114967_101458886	F029673	GGAG	LTKAEMIQHLRMAACNENTVTGMSNAFDLGQEHERDVIASIIFNMVKDQHLAQNIVDTMRVRE*