Scaffold Ga0114967_10073026

Overview

Basic Information

• Taxon OID: 3300010160
• Scaffold ID: Ga0114967_10073026
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2068
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011151	Metagenome / Metatranscriptome	294	Y
F022413	Metagenome / Metatranscriptome	214	N
F030431	Metagenome / Metatranscriptome	185	N
F085161	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114967_100730262	F085161	GGAG	MEVYIVKSFGPENGWVNLKAFDNNDAAVYFANTVEKQIPDDVEDEFVEIEVLNVRSWN*
Ga0114967_100730264	F030431	GAGG	MSDIEIEINELLDTTVMLCEDIAAQVGCPVEWVEVIVEKRWNDTLFSNADFMNGYDMAKENM*
Ga0114967_100730266	F011151	GGAG	MTGFQSKRKMAENRFKVYCEWCHDWHYVDEVDVLNVEEDIEGRDVAHFECGQPPSWNEDISRYDGTSSLVYKE*
Ga0114967_100730267	F022413	AGGA	MLLAKPKLTNTLDSKQFKTFAECQEYLEAYTDISMSLVEWIALGKILVAETMTTPEYYPKKVKGQIVMAKFDIEEFA*