Basic Information | |
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Taxon OID | 3300010160 Open in IMG/M |
Scaffold ID | Ga0114967_10073026 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2068 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (88.89%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Montjoie, Canada | |||||||
Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 4 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F011151 | Metagenome / Metatranscriptome | 294 | Y |
F022413 | Metagenome / Metatranscriptome | 214 | N |
F030431 | Metagenome / Metatranscriptome | 185 | N |
F085161 | Metagenome / Metatranscriptome | 111 | N |
Protein ID | Family | RBS | Sequence |
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Ga0114967_100730262 | F085161 | GGAG | MEVYIVKSFGPENGWVNLKAFDNNDAAVYFANTVEKQIPDDVEDEFVEIEVLNVRSWN* |
Ga0114967_100730264 | F030431 | GAGG | MSDIEIEINELLDTTVMLCEDIAAQVGCPVEWVEVIVEKRWNDTLFSNADFMNGYDMAKENM* |
Ga0114967_100730266 | F011151 | GGAG | MTGFQSKRKMAENRFKVYCEWCHDWHYVDEVDVLNVEEDIEGRDVAHFECGQPPSWNEDISRYDGTSSLVYKE* |
Ga0114967_100730267 | F022413 | AGGA | MLLAKPKLTNTLDSKQFKTFAECQEYLEAYTDISMSLVEWIALGKILVAETMTTPEYYPKKVKGQIVMAKFDIEEFA* |
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