Scaffold Ga0114967_10047783

Overview

Basic Information

• Taxon OID: 3300010160
• Scaffold ID: Ga0114967_10047783
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2722
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008296	Metagenome	335	Y
F029029	Metagenome / Metatranscriptome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114967_100477831	F029029	AGAAGG	MSKEPKGIRELLNKKDYSKSMDLRGNPIGDICLCGSELFIAIVAFEEGEICFYFLDGECADCGSLVTLSTPIDEH
Ga0114967_100477832	F008296	N/A	LKQNAWVDEYELLVSTLASEYYRKYPVTEAEDIRQVLWVWFLTHPVKYTEWSKLPPKDKERLIARSLRNAALKYCEQEKARKVGYDISDLYYYDPSVIEAFLPSIIGNTYEIPSKIKDLNFKFGKSGEVTDGNNWLVLRSDIEKAFNRLTEAKQNILRIKFSVENYEWSDLGKELNTSADGARMKVNRALSSLIKILGGWRTYNEPDIIETKEEGEEHE*