Scaffold Ga0114967

Basic Information
Taxon OID	3300010160 Open in IMG/M
Scaffold ID	Ga0114967_10030060 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300010160 Open in IMG/M

Scaffold ID

Ga0114967_10030060 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3652
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (14.29%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

3652

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (14.29%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	4
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F009252	Metagenome	320	Y
F017447	Metagenome / Metatranscriptome	240	Y
F021250	Metagenome	219	N
F033698	Metagenome / Metatranscriptome	176	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0114967_100300602	F017447	GAG	MFNRVAPKISRGIGQVADVGRNIGQVVKHSRNIGSIANQISGGRLSQSPIAQKMQDVANKIENGANFVSGNEDKAQQALSTISRKINA*
Ga0114967_100300603	F009252	N/A	MDKINIYINSKNRDLNESISNFTVRIPQNLLRLEQGEHFSLNVNGFYCYNSWFNCIDGFNNEFQIIIKNMNDEITETYNYKLNDGNPNVNDVKSNLNGLLINKVLVSYDKQRNKFIFKRSLPVSTQNYTMYLNIINSEDFLGFYKSDRNINILLPYLNNVFSNNIINILGDEAIIIKINGDCILAGNTVDNFGTETYEPSNIIFMKPIDVPSNGLLKYNNEDGGDSFHYKLANVEQITWFTLSVYNQDNEFIPNFSDYILLLQFIRHRTEEGRTEMALNTLIDYVKQIYLLISHFLFPATA*
Ga0114967_100300604	F033698	N/A	MKFLRYKQAARLTFMGIDDEYNNVASSYYNTKLKLFNNTEINTKLLRFRINNLHNIKLSQNAKLILESVYLPCVFDNNLDIKHDTNIVLRLKNISDSKCFNSSNDNESSPIIFSHSVQSRPEPIVRTLTTTLAGAISTYNNQALNINYYNSGISFFNPSPDKLYNFTIPNTFTNNTIFEFELTYEMNAGDNIVLADDSDIFYKFQCSLIICDEEEQDLISNDSNTVDFDKFKPHFPLKKSN*
Ga0114967_100300606	F021250	N/A	MIIEENLLGWNNIPVKSKEVVYPQSKDEKAPKNYFLGIFCGSRGSGKSYLFTKLLKTLEEKKAYLDDKLIPQRIILISSTANSDSNIIFKSLKNLDWENDVIENYEDDLLKIKMEELKYDLDHSKDYKLYKEAWHNFVKCKSIDDFSDDELKLLYSYDIISFKEFPKTKYPDGFLIHWIIDDMLGTNIFKNGRSTFTNLCIRNRHIIPGNIIIAIQSIMNVPKTIRLNANLLALFKFADSETVLEDVYPLFSAFVKEEQFKELYEYATKEPFDALVIDATRGKPVFKKNFDKVLNIS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114967_10030060

Overview

Ecosystem & Geography

Associated Families

Sequences