Scaffold Ga0114967_10003053

Overview

Basic Information

• Taxon OID: 3300010160
• Scaffold ID: Ga0114967_10003053
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13843
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (81.25%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005502	Metagenome / Metatranscriptome	398	N
F042872	Metagenome	157	Y
F043823	Metagenome	155	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114967_1000305312	F043823	N/A	MKKVKTNLTIDPKVKRNGERMARKSGLSLSAYITTLLVKELAKENRR*
Ga0114967_1000305314	F042872	N/A	MTSQSIIDQIESGNCTVGSNPTPSEAYHYNDLRRDGYTAVATESKLKHYQQNSFLIRGGYPAEPAYHPNPSVARMWSAQR*
Ga0114967_1000305323	F005502	AGGAG	MRMLLSFIALLGFTTTKLGNALIDLRPIAKKIDVKKIKVRITGYWPGEDEWSSRYQSSTGTRLRAGRHCAVDPDIIPLWSKIRVMGGKREWVAVDTGTAVKSKKASGGKLPVVDVFAASEKQFNAMRLPRVATVEVMK*