Scaffold Ga0114967_10000867

Overview

Basic Information

• Taxon OID: 3300010160
• Scaffold ID: Ga0114967_10000867
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25466
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (65.85%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000934	Metagenome / Metatranscriptome	828	Y
F001991	Metagenome / Metatranscriptome	607	Y
F017785	Metagenome	238	Y
F043944	Metagenome	155	Y
F082346	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114967_1000086715	F082346	AGGA	MIRFSKENVINELENQISKMETIWGFVTTNGTNQIKDRTEFDRVLAYGEYIALLSIYESVRDNTFLNI*
Ga0114967_1000086733	F001991	GGA	MALFSKNTLTQVSGFDNQIISGELVYNQKTFWNLAFATEGVPVSLTGATIDAQIIRRQISNLVDTRYGLSFDIADYTVSTPTAVNLTIANRVDAAGTFTLVIDESAWSVVSTDTQLDINASDPVAFSGRIKIAYPASGTTPAQDSIIFLLFLVRSDGVVN*
Ga0114967_1000086737	F017785	GAG	MNVIAPIENTSNIRYADFVQVVTPTTTYRFATTPTALTISGIGTFDGLGSLVGIGEVQRDIKSTANQTAITLVGIDTALLGWVLGQEIKGSQITMWKGFFDVDGNLITTGGTGGLYQYFFGYVNTFTISEQWMEDARMFVGTISVSASSIQIILQNRTGGRFTNDASWKFYNPTDTSMNRVGFVSTIYYPFGKTV*
Ga0114967_1000086738	F000934	AGTAGG	MANITDILAIAESVSINDQRFVGQVISRNQRISTSEIITVVPFQFEFKPHNYLQYSTNRGLLANLRYYDKALAQYLNIGSTGWVNYIAYQGSMTSGQIASCQWQTSSAAKNLVLGNLPSISSTAYIVKAGDFCQVGLYSYIATADVLRGSGSTVTIPVHRNLINGPLGSAINAVIGQYGTTVSMGGTTYTGVTFQIVLQQYPTYTLVPMTNDSFVAWNSTFKAFELVL*
Ga0114967_1000086740	F043944	GGA	LKKQVEVAMIFNGHTHDSLADIDDITMAQIQTMYADGLIGNRGTLEVLGSLTAGVFNYMRQANSRPYKLANILGSAYDYIYPPLSEQDKKASVNNSLLAFMTQAPDFKQDRFKHG*