Scaffold Ga0114967_10000004

Overview

Basic Information

• Taxon OID: 3300010160
• Scaffold ID: Ga0114967_10000004
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 199884
• Total Scaffold Genes: 284
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 211 (74.30%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F007305	Metagenome / Metatranscriptome	353	Y
F012108	Metagenome / Metatranscriptome	283	Y
F035281	Metagenome / Metatranscriptome	172	Y
F042870	Metagenome / Metatranscriptome	157	Y
F043902	Metagenome / Metatranscriptome	155	Y
F070037	Metagenome / Metatranscriptome	123	Y
F074795	Metagenome	119	Y
F074805	Metagenome / Metatranscriptome	119	Y
F093303	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114967_10000004120	F043902	GGAG	MTVQELRNCGYKVRVLHNRLYNGYYKWQVGSKPVEGYGYGPIDPDTKGGSTQIIIDSPHGSHYEGLAICSKKENYNKKLGVRIALGRCNVNQTFYTQYSQTKATNCATPLPADWSAAGIAYRDE*
Ga0114967_10000004128	F093303	AGGAG	MTKDEKFVIFWLYNRVAKTMPSNPIKGGDNDIIVDGINVTETVRKLLQDRLFV*
Ga0114967_10000004130	F042870	N/A	MFNFNELPDTKIPWWDNHYEDTYSEEIEDGYPYDMGTKVQE*
Ga0114967_10000004149	F007305	N/A	MKIIQKTIKKSYENWQPNSLVRCYHYAAAFDGTKMIEFAQNNPIKMSTKAFRIGKRFNIPKYLEYPYVHSESHLISKLLDRYNTIDPNWAICVLRINRQGLILGSKPCINCSKLLNAVGLNEIYYSDDNGNFVCPTKTIKIEPLTTPIAMI*
Ga0114967_10000004235	F070037	AGAAGG	MNFTESFQEFSSRLSTTDLALYAGAGLVLWVLFKDKLSPVQEFLGGLLSKVKGPTPTSIAPIVVPSVDTVVVPKSVVGNKPDDTFFKLVVSWKQTRDLAVQSGCGEAVKVADQMFPFLSPNVCKKEDKVS*
Ga0114967_1000000462	F074805	AGG	MSDFVVLTGILFAVTCAVVGFVFYSVYGGSKASLANAKDGQVYNFVYQQPLHGTHERFLAKVVGKQTLTADQIARLNRKSRYRIGDPEFIRTANLVTCQTPDGKIRNFYAERVSNCRKPLLAKVLFKSGVASLL*
Ga0114967_1000000466	F074795	GGAGG	MSKDEAIIKILKVLKSAMMVMCKPNRDEALTLAEEHGITAKDLIEVWEKMTLRI*
Ga0114967_1000000471	F012108	GAG	MIANGCSLDMFDKIVCALEVALGVNQRRVVTITGGMNLDNRIPCIKAIRLHTGWGLKEAKDWSDYLVGGWKYDKWHPAPAGVKHSMTLKTPEAAEALLRELTTLGCEGFLS*
Ga0114967_1000000474	F000325	AGGAG	MKTADGNDKLGKGCIVVSRPVGDTCPPDCDYLGNGCYAEATENQYKNARTAGFANVITEKNKIRAMILEAKRREKSIRWHERGDWFLNGELDLDYVANVTWACESILADGNTLPDMWFYTHIYDARLVSLEKYMNVYASVHDDNDMGEALAQGFKLFAWCDSDMKVAPKRPKSKVKAEAWRKALPKLVVLNATKFVVCPEIRRGRAEITCTGTKDSISCDLCVRGLANVLFPAH*
Ga0114967_1000000498	F035281	AGGAG	MIKYALVVALMIVGSTSFAGECANGTCSLRSRAVNVTREVINVPVMVTRRTVEATRNVGRRTVARVRSVVR*