Scaffold Ga0114960_10059583

Overview

Basic Information

• Taxon OID: 3300010158
• Scaffold ID: Ga0114960_10059583
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2231
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046819	Metagenome / Metatranscriptome	150	N
F047479	Metagenome / Metatranscriptome	149	N
F080837	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114960_100595833	F046819	GGAGG	VNNFQPYTQTNVVDFYKELVKRWADDQLDQLHEYPITDRKNALGRLIDSSLDVFRDDIEEEIRKRNLSFLVD*
Ga0114960_100595834	F047479	AGG	MMKNKLYLQIDLYNGKSKWITKKDFLLFTVGDEYDGKDSRGYYMTYKLDDGTIEKEYYNWKDNWESIKKTNTHTVYKGEECMLIDFSNKGTK*
Ga0114960_100595839	F080837	N/A	LVVAVNPTFPYTTSMMNKKTNNKKHEFFPKMMTTQVLKPYLKEAKRVGYTVSGSVKDGFIAVVTDACEQHPAGEVVMRGVKKPGVNVWIMGFNTLYWQEPTIAECLAESKWYAEMEGASK