NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114960_10005522

Scaffold Ga0114960_10005522


Overview

Basic Information
Taxon OID3300010158 Open in IMG/M
Scaffold IDGa0114960_10005522 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9272
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (46.15%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Aokuangvirus → Aokuangvirus SCBWM1(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F088769Metagenome / Metatranscriptome109Y
F093765Metagenome / Metatranscriptome106Y
F097205Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0114960_100055221F088769N/AMATFSLGTSGNISGAPGVYINEQAGNLARADIAAFSTVYMLVEAEESVPTLSNFLPFNTPVSITSLADYRLRLGGVIPTSRIPALSYNCVNEFFQNAQVGDLRVVRVGTPNQIVEVEFFPSGTKINSTALPSALMAGNVVYVQMNINGLQLTSGLTNTFNTTYPGYTANNEYLGVPVLIPVNYVSGDEVNNRKISAAISLAVKNAIESNPSVRSSVYVRDFGNVNKLTPGSNSENGFVTIASTTFDGNVSVVTSVFPVGDNSVFMQNTYDIQSIVGEQTNLERVPQDYTQCIDTAFDGQQDQGYLITPTAYAQFDAAGRALVGAAAALHCESNNF
Ga0114960_1000552212F093765GGAGGLELIYPVERLLANPRIFYAISNYLEGPDADTLKSAFYDLLEYGFPDYEDVEEIEFIAEEISFSFEPEDASVRITLDTGLSSILKPIDGEIKAQITNDHEMAATSAIYARIVLALEEANPEFSGNIALCSPPTPGNSYLRSEDGERFEGEFHLLTDPDRQYSFNVDIIDVKENLLKATYKQIS*
Ga0114960_100055222F097205GAGGMTVSIPFQQQFTFRKLGYLYFTDSLDYREVLNQNPQWKVTELPPIGAQLRISASSNTTGTPGGLAQGSFIFTSPDGQNNQKFFPYDTQSEYTRSLNRYTLQGVIDREALNGITFDSEQAVTGIQ*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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