NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114960_10003492

Scaffold Ga0114960_10003492


Overview

Basic Information
Taxon OID3300010158 Open in IMG/M
Scaffold IDGa0114960_10003492 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12013
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (75.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F070853Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0114960_1000349213F070853GAGMTWWGRVDSNGKRCMMPIHHGMRVDCETMKPTKPITIIGKKVDRKVGKTLLAQYQDFYKTTEVMTKAMDYEVFVRTTVEVVKEYFGEDVSQTAWHWQTCKQKADAIVDSAPLDAAILYIMGWDIGSMRWNLRRFMDTQYGRYSAHEDTPHDMFLNLKRRLNKEIYKANSQVFKSVEYSSGEVYPPSEWGYTIIVDGVEVKQYD*

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