Scaffold Ga0114964_10024330

Overview

Basic Information

• Taxon OID: 3300010157
• Scaffold ID: Ga0114964_10024330
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3413
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006587	Metagenome	369	Y
F012016	Metagenome	284	Y
F046899	Metagenome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114964_100243303	F046899	N/A	MSLKNTHNKRRKIVADANLNNFSPEARLAIKEFEAWQHKVFAKNAKKGWRFFNPDSLDKPTPRSAKEAWGGTYNRDDSEKNETRNQKIMLVIVTVVLLILSTL*
Ga0114964_100243308	F006587	GAGG	MDSNKYEGTGYIVVGFILGALLTWSIMQAIHIQKKYKMNLKCMQGELYEEIKPNFYVKSHLECFEQRSF*
Ga0114964_100243309	F012016	GGA	MEQPYAWAIEEFNSDGDLVWSSMSKFRPTELSWIKDLPTKKHNIVLTPLYKDESKAEKITGIKSYKESTAKMIEAYNGL*