Scaffold Ga0114964_10006269

Overview

Basic Information

• Taxon OID: 3300010157
• Scaffold ID: Ga0114964_10006269
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7592
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (11.76%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031091	Metagenome / Metatranscriptome	183	Y
F032541	Metagenome / Metatranscriptome	179	Y
F053885	Metagenome / Metatranscriptome	140	Y
F066569	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114964_100062691	F053885	N/A	MTSRVKTPAELMVDLKGNYIQVITKNGKTHSKLFTDPQKALRAVGGVDNVKYLREVFKEQVNAKYIEIDSLTGTKENEL*
Ga0114964_1000626913	F032541	N/A	MSLINEIKQMLSEVTKVTFKGNKFVLKIDVNEDQNKKGIKVQFLTTTFAGMSKQQQDDIAMDLGAKLNQGLTPLGLTVERDRELKDKTILGFFIYIEYLDKIIINALNQVAKEPSND*
Ga0114964_100062692	F066569	N/A	MDREQYLQMRRTGQYNIGWFYQYFLDNKDKSRDTPPFEVFQQAFQMYFRMNMAITIEMLDKKMEVTTIHNKAGQLIYIN*
Ga0114964_100062696	F031091	N/A	MVGAYTKTFTCEVTGITTTYTYNTNSIVSGIVKAEFEYPKGYLEQFDKKQKQHDNLPKTKRLYLNPATGNEVSYARARALGLLK*