Scaffold Ga0114964_10000555

Overview

Basic Information

• Taxon OID: 3300010157
• Scaffold ID: Ga0114964_10000555
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28822
• Total Scaffold Genes: 82
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 56 (68.29%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013870	Metagenome / Metatranscriptome	267	Y
F027400	Metagenome / Metatranscriptome	194	Y
F033799	Metagenome	176	Y
F039483	Metagenome / Metatranscriptome	163	Y
F091345	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114964_1000055528	F027400	AGGA	MTNSELKQKLEQAQELLSDVYHWASTPMTNGLQVLPLSTNSEIESLMSVADGCISDALSELEDV*
Ga0114964_1000055531	F033799	AGGA	MNRNFIVICTECSEEHDMNSIKFLNVEEDIQGRDIMHFECPVTKLEARSLVYAE*
Ga0114964_1000055548	F091345	N/A	MKTMQQQETEAILSMVELIKTLEQKLADAKARIEELENKQPSNFVNLKNHYE*
Ga0114964_1000055552	F039483	AGG	MSNELDALSGVETPSLTNFWKWVKKTFTISYQDEISHYLNQSVDFVDYENRVRTLQRRGMI*
Ga0114964_1000055581	F013870	GGA	MSNELKKECGLGMYWCNTDNKCKPIQEDAPVNAVGGGQIAGVGVGPKGEPGINKKKGITSFISFIRRKKPQ*